PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10532_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 533aa    MW: 60195.4 Da    PI: 7.6581
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10532_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-0688111327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f++  G C+ GdrC+F Hgp
  Neem_10532_f_1  88 RVPCFFYFN-GLCNKGDRCSFLHGP 111
                     678888888.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.352534IPR000571Zinc finger, CCCH-type
PfamPF156633.9E-12575No hitNo description
SMARTSM003560.014633IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5963662IPR000571Zinc finger, CCCH-type
SMARTSM003560.613861IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.81285112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-685110IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-486111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-590113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEELQKRNTD CVYFLASPLT CKKGIDCEYR HNDVARLNPR DCWYWLSGNC INPTCSFRHP  60
PLDGHATKVP SEFASLPDQS SVVVNKTRVP CFFYFNGLCN KGDRCSFLHG PNDSAPAGKP  120
SKAAAATNDA LQSENKSSGG NGTGSAPTET HPNPAVITSN QAVDTIVRTK VGILHSSPRS  180
FPQRSASPPV SLSDCEEAAV INSDFMPPLE GLMKSKSHLS TDWSPEEQVD DHIEPEGRRE  240
LSPEFDVLLN NDNMSENLGY EDDPEYLLAI NREHRELNGH LLCYDFEDAI EYEPMYPDDA  300
CNCLDNNQHV LDDFSEHPSN SKGRILDSIL SRKRKLLPMK LAVANRNVDL RDYLRKRRLV  360
DGHLVIHSSR RRQSSRLIGR SQERPQGLVV NQRLHRILAS EFGENYIKSN ENKGTFLKRA  420
NRQGWPRHSK SNMLRQGYKE KRRACKEFDR LVISREPFSG ERTSSQISST FTGPKTLAEI  480
KEGKKKAEEN GDCFGEMRNS TRMSVDFQGP KPLNEILKEK RRLDTVREGD SVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475812.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_006475813.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A067GL000.0A0A067GL00_CITSI; Uncharacterized protein
STRINGVIT_11s0016g04980.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710